PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G281600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 187aa    MW: 20824.1 Da    PI: 6.925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G281600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-105292954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r RR+ri ++f  L++l+P       +K++ +++Le+A++Y+k L
  Prupe.6G281600.1.p 52 ARERRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAIHYVKFL 92
                        699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3834392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1348102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-124996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.48E-144996No hitNo description
SMARTSM003539.6E-134998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-75292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDYFSATINS SSDGSNSSSA TKHNGTGEKI EGGVKSKSKG VRLSTDPQSV AARERRHRIS  60
DRFKILQSLV PGGTKMDTVS MLEEAIHYVK FLKAQIWLHQ SMINFVDDDD GLHHDRSSSS  120
SSSSMFQYQL PADHHLHHPT GSHDFYSQNN FVQPPSPAMN IPLPDPNYFQ GQEAMPNIEA  180
YMKYYS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243989.11e-116PREDICTED: transcription factor LAX PANICLE-like
TrEMBLM5W2M51e-101M5W2M5_PRUPE; Uncharacterized protein
STRINGVIT_08s0058g00110.t011e-41(Vitis vinifera)
STRINGPOPTR_0016s12830.19e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.12e-33APRATAXIN-like